Pandas version checks
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[x] I have checked that this issue has not already been reported.
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[x] I have confirmed this bug exists on the latest version of pandas.
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[ ] I have confirmed this bug exists on the main branch of pandas.
Reproducible Example
import pandas as pd
cat_data = pd.Categorical([15, 16, 17, 18], categories=pd.Series(list(range(3, 24)), dtype="Int64"), ordered=True)
df1 = pd.DataFrame({"hr": cat_data, "values1": "a b c d".split()}).set_index("hr")
df2 = pd.DataFrame({"hr": cat_data, "values2": "xyzzy foo bar ...".split()}).set_index("hr")
df1.columns = pd.CategoricalIndex([4], dtype=cat_data.dtype, name="other_hr")
df2.columns = pd.CategoricalIndex([3], dtype=cat_data.dtype, name="other_hr")
print(pd.__version__)
# Clunky, but works
df_joined_1 = df1.reset_index(level="hr").merge(df2.reset_index(level="hr"), on="hr").set_index("hr")
# Works on 1.4.4 and nightly (3.0.0.dev0+2177.g8a1d5a06f9), not 2.2.3 or 2.3.0
df_joined_2 = df1.join(df2)
# returns True... assuming we got this far
df_joined_1.equals(df_joined_2)
Issue Description
joining two DataFrames which have a CategoricalIndex as columns (for example, due to having pivoted on a categorical column) results in an InvalidIndexError (see below) on Pandas versions 2.2.3 and 2.3.0. The same code works with 1.4.4 (from which I am trying to migrate to 2.x) and nightly.
While the issue does not manifest in nightly, I am still reporting it in the hopes of getting it fixed in future 2.x releases.
Expected Behavior
Code executes successfully and the last statement returns True
Installed Versions
Pandas 1.4.4 (works)
INSTALLED VERSIONS
------------------
commit : ca60aab7340d9989d9428e11a51467658190bb6b
python : 3.10.16.final.0
python-bits : 64
OS : Darwin
OS-release : 24.5.0
Version : Darwin Kernel Version 24.5.0: Tue Apr 22 19:53:27 PDT 2025; root:xnu-11417.121.6~2/RELEASE_ARM64_T6041
machine : arm64
processor : arm
byteorder : little
LC_ALL : None
LANG : en_US.UTF-8
LOCALE : en_US.UTF-8
pandas : 1.4.4
numpy : 1.23.5
pytz : 2025.2
dateutil : 2.9.0.post0
setuptools : 80.7.1
pip : 25.1.1
Cython : None
pytest : None
hypothesis : None
sphinx : None
blosc : None
feather : None
xlsxwriter : None
lxml.etree : None
html5lib : None
pymysql : None
psycopg2 : None
jinja2 : None
IPython : 8.36.0
pandas_datareader: None
bs4 : None
bottleneck : None
brotli : None
fastparquet : None
fsspec : None
gcsfs : None
markupsafe : None
matplotlib : 3.10.3
numba : None
numexpr : None
odfpy : None
openpyxl : 3.1.2
pandas_gbq : None
pyarrow : 8.0.0
pyreadstat : None
pyxlsb : None
s3fs : None
scipy : None
snappy : None
sqlalchemy : 2.0.41
tables : None
tabulate : None
xarray : None
xlrd : None
xlwt : None
zstandard : None
Pandas 2.2.3 (does not work)
INSTALLED VERSIONS
------------------
commit : 0691c5cf90477d3503834d983f69350f250a6ff7
python : 3.12.9
python-bits : 64
OS : Darwin
OS-release : 24.5.0
Version : Darwin Kernel Version 24.5.0: Tue Apr 22 19:53:27 PDT 2025; root:xnu-11417.121.6~2/RELEASE_ARM64_T6041
machine : arm64
processor : arm
byteorder : little
LC_ALL : None
LANG : en_US.UTF-8
LOCALE : en_US.UTF-8
pandas : 2.2.3
numpy : 2.2.4
pytz : 2025.1
dateutil : 2.9.0.post0
pip : 24.3.1
Cython : None
sphinx : None
IPython : 9.0.2
adbc-driver-postgresql: None
adbc-driver-sqlite : None
bs4 : None
blosc : None
bottleneck : None
dataframe-api-compat : None
fastparquet : None
fsspec : None
html5lib : None
hypothesis : None
gcsfs : None
jinja2 : 3.1.6
lxml.etree : None
matplotlib : 3.10.1
numba : None
numexpr : None
odfpy : None
openpyxl : 3.1.5
pandas_gbq : None
psycopg2 : None
pymysql : None
pyarrow : 19.0.1
pyreadstat : None
pytest : None
python-calamine : None
pyxlsb : None
s3fs : None
scipy : 1.15.2
sqlalchemy : 2.0.39
tables : None
tabulate : None
xarray : None
xlrd : None
xlsxwriter : None
zstandard : None
tzdata : 2025.1
qtpy : None
pyqt5 : None
Pandas 2.3.0 (does not work)
INSTALLED VERSIONS
------------------
commit : 2cc37625532045f4ac55b27176454bbbc9baf213
python : 3.12.9
python-bits : 64
OS : Darwin
OS-release : 24.5.0
Version : Darwin Kernel Version 24.5.0: Tue Apr 22 19:53:27 PDT 2025; root:xnu-11417.121.6~2/RELEASE_ARM64_T6041
machine : arm64
processor : arm
byteorder : little
LC_ALL : None
LANG : en_US.UTF-8
LOCALE : en_US.UTF-8
pandas : 2.3.0
numpy : 2.3.0
pytz : 2025.2
dateutil : 2.9.0.post0
pip : 25.1.1
Cython : None
sphinx : None
IPython : None
adbc-driver-postgresql: None
adbc-driver-sqlite : None
bs4 : None
blosc : None
bottleneck : None
dataframe-api-compat : None
fastparquet : None
fsspec : None
html5lib : None
hypothesis : None
gcsfs : None
jinja2 : None
lxml.etree : None
matplotlib : None
numba : None
numexpr : None
odfpy : None
openpyxl : None
pandas_gbq : None
psycopg2 : None
pymysql : None
pyarrow : 20.0.0
pyreadstat : None
pytest : None
python-calamine : None
pyxlsb : None
s3fs : None
scipy : None
sqlalchemy : None
tables : None
tabulate : None
xarray : None
xlrd : None
xlsxwriter : None
zstandard : None
tzdata : 2025.2
qtpy : None
pyqt5 : None
Pandas nightly (works)
INSTALLED VERSIONS
------------------
commit : 8a1d5a06f9fb3c232249e3ed301932053efb06d8
python : 3.12.9
python-bits : 64
OS : Darwin
OS-release : 24.5.0
Version : Darwin Kernel Version 24.5.0: Tue Apr 22 19:53:27 PDT 2025; root:xnu-11417.121.6~2/RELEASE_ARM64_T6041
machine : arm64
processor : arm
byteorder : little
LC_ALL : None
LANG : en_US.UTF-8
LOCALE : en_US.UTF-8
pandas : 3.0.0.dev0+2177.g8a1d5a06f9
numpy : 2.4.0.dev0+git20250617.32f4afa
dateutil : 2.9.0.post0
pip : 25.1.1
Cython : None
sphinx : None
IPython : None
adbc-driver-postgresql: None
adbc-driver-sqlite : None
bs4 : None
bottleneck : None
fastparquet : None
fsspec : None
html5lib : None
hypothesis : None
gcsfs : None
jinja2 : None
lxml.etree : None
matplotlib : None
numba : None
numexpr : None
odfpy : None
openpyxl : None
psycopg2 : None
pymysql : None
pyarrow : None
pyiceberg : None
pyreadstat : None
pytest : None
python-calamine : None
pytz : None
pyxlsb : None
s3fs : None
scipy : None
sqlalchemy : None
tables : None
tabulate : None
xarray : None
xlrd : None
xlsxwriter : None
zstandard : None
tzdata : 2025.2
qtpy : None
pyqt5 : None
Error traceback
On Pandas 2.3.3:
Traceback (most recent call last):
File "/Users/voipiti/.pyenv/versions/pd23-312/lib/python3.12/site-packages/pandas/core/indexes/base.py", line 3812, in get_loc
return self._engine.get_loc(casted_key)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "pandas/_libs/index.pyx", line 167, in pandas._libs.index.IndexEngine.get_loc
File "pandas/_libs/index.pyx", line 175, in pandas._libs.index.IndexEngine.get_loc
File "pandas/_libs/index_class_helper.pxi", line 86, in pandas._libs.index.MaskedInt64Engine._check_type
KeyError: slice(None, None, None)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/Users/voipiti/.pyenv/versions/pd23-312/lib/python3.12/site-packages/pandas/core/frame.py", line 10764, in join
return merge(
^^^^^^
File "/Users/voipiti/.pyenv/versions/pd23-312/lib/python3.12/site-packages/pandas/core/reshape/merge.py", line 184, in merge
return op.get_result(copy=copy)
^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/voipiti/.pyenv/versions/pd23-312/lib/python3.12/site-packages/pandas/core/reshape/merge.py", line 888, in get_result
result = self._reindex_and_concat(
^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/voipiti/.pyenv/versions/pd23-312/lib/python3.12/site-packages/pandas/core/reshape/merge.py", line 837, in _reindex_and_concat
left = self.left[:]
~~~~~~~~~^^^
File "/Users/voipiti/.pyenv/versions/pd23-312/lib/python3.12/site-packages/pandas/core/frame.py", line 4080, in __getitem__
and key in self.columns
^^^^^^^^^^^^^^^^^^^
File "/Users/voipiti/.pyenv/versions/pd23-312/lib/python3.12/site-packages/pandas/core/indexes/category.py", line 368, in __contains__
return contains(self, key, container=self._engine)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/voipiti/.pyenv/versions/pd23-312/lib/python3.12/site-packages/pandas/core/arrays/categorical.py", line 230, in contains
loc = cat.categories.get_loc(key)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/voipiti/.pyenv/versions/pd23-312/lib/python3.12/site-packages/pandas/core/indexes/base.py", line 3818, in get_loc
raise InvalidIndexError(key)
pandas.errors.InvalidIndexError: slice(None, None, None)
Comment From: rhshadrach
Thanks for the report; I'll mark as a regression for now, but it seems likely the 2.x series will not see any more releases.
Comment From: jbrockmendel
i can't reproduce this in 2.3.0
Comment From: rhshadrach
I can reproduce on 2.3.x.